Polymorphism:
rs16891982

Meta-Analysis Plots

meta-analysis of the log odd ratios using random-effects models

some textClick forest plot to enlarge


Contour-enhanced funnel plot of the log odd rations vs standard error

some textClick funnel plot to enlarge

Meta-Analysis Details


StudyPopulationSourceGeneChromosomePolymorphismResultComments
Fernandez, Hum Mutat, 2008SpainCLSLC45A2 5rs16891982 (Phe374Leu, F374L)NANA
CasesControls
NumberMinor Allele FrequencyMajor AlleleMinor AlleleM/MM/mm/mNumberMinor Allele FrequencyM/MM/mm/m
131NACGNANANA245NANANANA

StudyPopulationSourceGeneChromosomePolymorphismResultComments
Guedj, Hum Mutat, 2008FranceCL cases / blood donors controlsSLC45A2 5rs16891982 (Phe374Leu, F374L)PNA
CasesControls
NumberMinor Allele FrequencyMajor AlleleMinor AlleleM/MM/mm/mNumberMinor Allele FrequencyM/MM/mm/m
965NACGNANANA1426NANANANA

StudyPopulationSourceGeneChromosomePolymorphismResultComments
Nan, Int J Cancer, 2009USANHSSLC45A2 5rs16891982 (Phe374Leu, F374L)NSAdjusted for age.
CasesControls
NumberMinor Allele FrequencyMajor AlleleMinor AlleleM/MM/mm/mNumberMinor Allele FrequencyM/MM/mm/m
2070.02CG198818370.036779562

StudyPopulationSourceGeneChromosomePolymorphismResultComments
Stacey, Nat Genet, 2009Iceland POSLC45A25rs16891982 (Phe374Leu, F374L)NSNA
CasesControls
NumberMinor Allele FrequencyMajor AlleleMinor AlleleM/MM/mm/mNumberMinor Allele FrequencyM/MM/mm/m
5550.01CG54213024560.0182368871

StudyPopulationSourceGeneChromosomePolymorphismResultComments
Stacey, Nat Genet, 2009HollandPOSLC45A25rs16891982 (Phe374Leu, F374L)PNA
CasesControls
NumberMinor Allele FrequencyMajor AlleleMinor AlleleM/MM/mm/mNumberMinor Allele FrequencyM/MM/mm/m
7470.01CG73215017770.0251689871

StudyPopulationSourceGeneChromosomePolymorphismResultComments
Stacey, Nat Genet, 2009SwedenPOSLC45A25rs16891982 (Phe374Leu, F374L)PNA
CasesControls
NumberMinor Allele FrequencyMajor AlleleMinor AlleleM/MM/mm/mNumberMinor Allele FrequencyM/MM/mm/m
10610.01CG10362505410.043495451

StudyPopulationSourceGeneChromosomePolymorphismResultComments
Stacey, Nat Genet, 2009AustriaPOSLC45A25rs16891982 (Phe374Leu, F374L)NSNA
CasesControls
NumberMinor Allele FrequencyMajor AlleleMinor AlleleM/MM/mm/mNumberMinor Allele FrequencyM/MM/mm/m
1520.01CG147503760.037349261

StudyPopulationSourceGeneChromosomePolymorphismResultComments
Stacey, Nat Genet, 2009ItalyPOSLC45A25rs16891982 (Phe374Leu, F374L)PNA
CasesControls
NumberMinor Allele FrequencyMajor AlleleMinor AlleleM/MM/mm/mNumberMinor Allele FrequencyM/MM/mm/m
5600.05CG5045423670.101297664

StudyPopulationSourceGeneChromosomePolymorphismResultComments
Stacey, Nat Genet, 2009SpainPOSLC45A25rs16891982 (Phe374Leu, F374L)PNA
CasesControls
NumberMinor Allele FrequencyMajor AlleleMinor AlleleM/MM/mm/mNumberMinor Allele FrequencyM/MM/mm/m
8050.06CG70498316720.171114947449

StudyPopulationSourceGeneChromosomePolymorphismResultComments
Duffy, J Invest Dermatol, 2010AustraliaPOSLC45A2 5rs16891982 (Phe374Leu, F374L)PNA
CasesControls
NumberMinor Allele FrequencyMajor AlleleMinor AlleleM/MM/mm/mNumberMinor Allele FrequencyM/MM/mm/m
17310.01CG168546040320.052362539611

StudyPopulationSourceGeneChromosomePolymorphismResultComments
Amos, Hum Mol Genet, 2011 USA_MD Anderson Cancer CenterCLSLC45A25rs16891982p0,54[0,37-0,81]
CasesControls
NumberMinor Allele FrequencyMajor AlleleMinor AlleleM/MM/mm/mNumberMinor Allele FrequencyM/MM/mm/m
1804NAGCNANANA1026NANANANA

StudyPopulationSourceGeneChromosomePolymorphismResultComments
Ibarrola-Villava, Eur J Cancer, 2012France, Italy, SpainCLSLC45A2 5rs16891982 (Phe374Leu, F374L)PNA
CasesControls
NumberMinor Allele FrequencyMajor AlleleMinor AlleleM/MM/mm/mNumberMinor Allele FrequencyM/MM/mm/m
14490.04CG13291101013270.116105224332

StudyPopulationSourceGeneChromosomePolymorphismResultComments
Stefanaki, Plos One, 2013GreeceCLSLC45A2 5rs16891982p0,51[0,34-0,76]
CasesControls
NumberMinor Allele FrequencyMajor AlleleMinor AlleleM/MM/mm/mNumberMinor Allele FrequencyM/MM/mm/m
284GCNANANA284NANANA

StudyPopulationSourceGeneChromosomePolymorphismResultComments
Zhang et al., Hum Mol Genet, 2013USA_MD_Anderson Cancer CenterSLC45A25rs16891982pbeta:-0.52, SE(0,19) p(0,01)
CasesControls
NumberMinor Allele FrequencyMajor AlleleMinor AlleleM/MM/mm/mNumberMinor Allele FrequencyM/MM/mm/m
1804GCNANANA1026NANANA